Re: [AMBER] MMPBSA error

From: Dwight McGee <dwight.mcgee.gmail.com>
Date: Tue, 23 Mar 2010 10:32:47 -0400

Hi Soumya,


 The error which posted "No skew or curtosis when zero variance in moment"
comes from the mm_pbsa_statistics.pm. If you could attach your output files
from mm_pbsa.pl and your input files I might can offer greater insight into
what is exactly happening.

On Tue, Mar 23, 2010 at 4:21 AM, Soumya Lipsa Rath
<soumyalipsabt.gmail.com>wrote:

> Hello,
>
> I am trying to run MMPBSA to calculate the binding energy . Besides getting
> the frequently reported error
> "No skew or curtosis when zero variance in moment" . The values in my
> statistics.out file are high.
> I also tried running the examples (in the /src/mm_pbsa/Examples ) but I
> still get the same error. What can be done to rectify this error?
>
> (Strangely when I decrease the NFREQ value I get additional errors like
> vertex atom mismatch.)
>
> Regards,
>
> Soumya
> _______________________________________________
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>



-- 
T. Dwight McGee Jr.
Quantum Theory Project
University of Florida
dwight.mcgee.gmail.com
"Problems cannot be solved at the same level of awareness that created
them."
               Albert Einstein
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Received on Tue Mar 23 2010 - 08:00:04 PDT
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