Re: [AMBER] How to apply extra dihedrals

From: Lekpa Duukori <duukori.gmail.com>
Date: Tue, 16 Mar 2010 22:19:52 -0600

Thanks everyone.

On Tue, Mar 16, 2010 at 9:57 PM, Bill Ross <ross.cgl.ucsf.edu> wrote:

> > This will override the wild-card definitions in the parm file. This
> > is because this parameter was defined last. If, for instance, you did
> > not use a -3 for the first line, then the second line would overwrite
> > the first (because a positive value in the last column tells leap to
> > terminate the series). However, for those dihedrals that the
> > wild-cards match that your definition above does not, those will still
> > take the values defined by the wild-card.
>
> The handling of multiplicities complicates this picture if memory
> of leap's algorithms is accurate. Leap's assignment of dihedrals is
> one of the most complicated bits of code that I have worked on.
>
> Bill
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue Mar 16 2010 - 21:30:02 PDT
Custom Search