[AMBER] Fwd: understanding AMBER FORCES parm files?

From: <whimsica.aol.com>
Date: Sat, 13 Mar 2010 13:18:37 -0500





-----Original Message-----
From: whimsica.aol.com
To: amber.amber.org
Sent: Sat, Mar 13, 2010 10:17 am
Subject: Fwd: understanding NAB and AMBER FORCES for dept of education funded project

My question is what do the numbers correspond to in this line from the nuc94.in file?

 6 C5' CT M 5 4 3 1.44 119.00 -39.22 -0.0069

and what do the numbers correspond to in this parm99.dat line
C -CT 317.0 1.522 JCC,7,(1986),230; AA

How do I use the


to interpret these files? There are 100's of formats and no lines that say what format it is in the parm99 file or any other.
So how do you know which one it is?


Daniel Savage
Working on some DNA simulations for education software funded by DofE

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Received on Sat Mar 13 2010 - 10:30:02 PST
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