Re: [AMBER] Difference of ff99 and ff03 in building DNA duplex

From: Asfa Ali <asfa.iisc.gmail.com>
Date: Fri, 12 Mar 2010 10:10:37 +0530

Hi,

If nucgen produces files with outdated nomenclature, what should we use to
create DNA duplex so that it works well with leaprc.ff99SB (which uses PDB
Version 3)?

Also I want to create a 22 mer single stranded DNA. What should I use?

Thanks...
Asfa.
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Received on Thu Mar 11 2010 - 21:00:05 PST