it's not clear what you mean by dielectric of 1. you mean only the
dielectric given by the water model?
the tutorials show how to run simulations with TIP3P, and the dielectric is
discussed in the manual (see the dielc variable).
On Wed, Mar 10, 2010 at 5:11 AM, Pallavi Mohanty
<pallavipmohanty.gmail.com>wrote:
> yes i have gone through the tutorial but didnt find appropraite answer for
> my query..again i want to ask the asme question that what parameters i need
> to include if ruuning the equilibration with dilectric = 1 in presence of
> TIP3P water
>
> On Tue, Mar 9, 2010 at 5:01 PM, Carlos Simmerling <
> carlos.simmerling.gmail.com> wrote:
>
> > there are many tutorials available on the web site at www.ambermd.org.
> > they
> > are very helpful.
> >
> >
> > On Mon, Mar 8, 2010 at 11:42 PM, Pallavi Mohanty
> > <pallavipmohanty.gmail.com>wrote:
> >
> > > Need to run Explicit Solvent Models with PME and dielectric 1 for my
> > > system.Can I know the parameters at at equlibration and production
> phase
> > as
> > > i am pretty new for AMBER
> > >
> > > --
> > > Regards,
> > >
> > > Pallavi Mohanty
> > > _______________________________________________
> > > AMBER mailing list
> > > AMBER.ambermd.org
> > > http://lists.ambermd.org/mailman/listinfo/amber
> > >
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
>
>
>
> --
> Regards,
>
> Pallavi Mohanty
> _______________________________________________
> AMBER mailing list
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>
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Received on Wed Mar 10 2010 - 04:00:03 PST
