Re: [AMBER] parameter file for modified nucleosides (O6-methyl guanine)

From: Bill Ross <>
Date: Tue, 9 Mar 2010 10:07:41 -0800 (PST)

> I noticed my prepin file is ending at C4 (last line).

After loadamberprep, you need to set 'connect1' to the atom that
will be bonded to the next residue. You may also need to set
the residue 'tail' atom to the same. There should be some scripts
that demonstrate this somewhere in the distribution, and possibly
in one or more demos.


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Received on Tue Mar 09 2010 - 10:30:04 PST
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