the best way is using ptraj. I suggest spending some time reading the ptraj
manual, and then ask us if you have particular questions. the manual and the
tutorials have a lot of useful information and examples.
On Tue, Mar 9, 2010 at 8:03 AM, Asfa Ali <asfa.iisc.gmail.com> wrote:
> Hi,
>
> I have done the simulation of DNA. Now I want to calculate H-bond and
> torsion angle distortions.
>
> Plz can anyone tell me how to find H-bond distortion and torsion angle
> distortions that occurs during simulation through AMBER.
>
> Thanks,
> Asfa.
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue Mar 09 2010 - 06:30:04 PST
