Dear List Members,
applying the Amber10 "bugfix.all" patch fails, I could not find help searching the mail reflector archive.
This is the error message:
---------------------------------------------------
patching file src/pmemd/src/extra_pnts_nb14.fpp
Hunk #2 succeeded at 508 (offset -1 lines).
Hunk #4 FAILED at 541.
1 out of 4 hunks FAILED -- saving rejects to file src/pmemd/src/extra_pnts_nb14.fpp.rej
patching file src/pmemd/src/nb_exclusions.fpp
patching file src/pmemd/src/pme_alltasks_setup.fpp
Hunk #1 succeeded at 103 (offset 5 lines).
Hunk #2 succeeded at 186 (offset 2 lines).
can't find file to patch at input line 259359
Perhaps you used the wrong -p or --strip option?
The text leading up to this was:
--------------------------
|
|--- /src/pmemd/src/prmtop_dat.fpp 2007-12-19 17:25:09.000000000 -0500
|+++ /src/pmemd/src/prmtop_dat.fpp 2010-02-05 16:49:08.000000000 -0500
--------------------------
---------------------------------------------------
Here is the content of the reject log (src/pmemd/src/extra_pnts_nb14.fpp.rej)
---------------------------------------------------
***************
*** 538,544 ****
i11(2, (natom + numextra)), &
i12(2, 3 * (nbonh + nbona)), &
i13(2, 3 * (ntheth + ntheta)), &
- i14(2, 3 * (nphih + nphia)), &
s3(maxa), &
stat = alloc_failed)
--- 541,547 ----
i11(2, (natom + numextra)), &
i12(2, 3 * (nbonh + nbona)), &
i13(2, 3 * (ntheth + ntheta)), &
+ i14(2, nb14_mult_fac * (nphih + nphia)), &
s3(maxa), &
stat = alloc_failed)
---------------------------------------------------
Are there different versions of the Amber10 source package? I just downloaded the latest version of the bugfix.all file for Amber10.
Thanks in advance,
Lars
--
Dr. Lars Packschies, RRZK Robert-Koch-Str.10 ,H
D-50931 Cologne H H O
Comp.Dpt., Univ. of Cologne; Phn (+49)221-478-7022 `O-H. | ,' `H
Packschies.rrz.uni-koeln.de; Fax (+49)221-478-5568 `O-H
--
Dr. Lars Packschies, RRZK, Robert-Koch-Str.10 ,H
Fachbereichsbetreuung Chemie 50931 Koeln H H O
Universitaet zu Koeln Tel 0221-478-7022 `O-H. | ,' `H
Packschies.rrz.uni-koeln.de Fax 0221-478-5568 `O-H
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Received on Mon Mar 08 2010 - 05:00:03 PST
