Date: Wed, 24 Feb 2010 16:17:39 +0100
Hi everybody,
I want to align several trajectories to a reference frame as follows:
trajin prod.10ps_steps.mdcrd 1 1000 1
reference ref.pdb
rms reference .CA,C,N
trajout prod.10ps_steps.aligned.mdcrd
Unfortunately, this works for some, but not all of my trajectories (as
can be seen in the attached file). Of course, I'm surely using the same
reference frame for all alignments.
Has anybody an idea on that?
Greets
Oliver
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(image/png attachment: traj_alignment.png)
