Re: [AMBER] limit of joining residues

From: Bill Ross <ross.cgl.ucsf.edu>
Date: Thu, 11 Feb 2010 09:46:04 -0800 (PST)

>> Someone may need to debug leap using your input files
> who can help me ?

Amber developers most likely.

> Should I do by myself;

Always good to try.

> In google I found gdb is for debugging...

Yes.
        
> I found xaLeap in=A0 /opt/amber10/bin/=20
> so I used:=20
>
> gdb /opt/amber10/bin/ core
        
Should be

  gdb /opt/amber10/bin/xaLeap

(assuming 'file /opt/amber10/bin/xaLeap' says something like "ELF binary"
indicating it is a compiled program and not a script).
        
> Also I searched for 'core' but I didnt find it.

If leap didn't "dump core" gdb is useless here. Sometimes core is
core.123434534 (some number).

Bill

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Received on Thu Feb 11 2010 - 10:00:04 PST
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