Dear Bill Ross;
Sorry for delay, I couldn't reply you
I am using red hat linux. Honestly saying I never tried this command before and not fully understood what you suggested.
limit command is not found.
ulimit -a is giving this information:
ulimit -a
core file size (blocks, -c) 0
data seg size (kbytes, -d) unlimited
file size (blocks, -f) unlimited
pending signals (-i) 1024
max locked memory (kbytes, -l) 32
max memory size (kbytes, -m) unlimited
open
files
(-n) 1024
pipe size (512 bytes, -p) 8
POSIX message queues (bytes, -q) 819200
stack size (kbytes, -s) 10240
cpu time (seconds, -t) unlimited
max user processes (-u) 16239
virtual memory (kbytes, -v) unlimited
file
locks
(-x) unlimited
What should I increase here. Should I modify some file in etc/....
sorry, thanks and regards;
JIomm
--- On Mon, 2/8/10, Bill Ross <ross.cgl.ucsf.edu> wrote:
From: Bill Ross <ross.cgl.ucsf.edu>
Subject: Re: [AMBER] limit of joining residues
To: amber.ambermd.org
Date: Monday, February 8, 2010, 5:32 PM
> =A0/opt/amber10/exe/tleap: line 8: 17065 Killed
I wonder if you reached some limit on memory. Try 'limit' or 'limits'
in your unix shell, e.g.
% limit
cputime unlimited
filesize unlimited
datasize 524288 kbytes
stacksize 32768 kbytes
coredumpsize unlimited
memoryuse 65011176 kbytes
vmemoryuse 16777216 kbytes
descriptors 4096
For this setup in your shoes I would try
% ulimit datasize
Bill
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Received on Wed Feb 10 2010 - 08:30:04 PST
