Re: [AMBER] positional restraints of different strengths

From: Jose Borreguero <borreguero.gmail.com>
Date: Tue, 9 Feb 2010 08:00:06 -0500

This did the trick. Many many thanks
-Jose

On Sat, Feb 6, 2010 at 11:53 AM, case <case.biomaps.rutgers.edu> wrote:

> On Fri, Feb 05, 2010, Jose Borreguero wrote:
> >
> > I want to impose positional restraints of different strengths to
> different
> > residues. I have the following section in my input file:
> > ...
> > #Apply restraints to the solute atoms
> > 100.0
> > RES 1 166
> > 1.0
> > RES 181
>
> I think you need END and title cards between separate sections, e.g.
>
> Title: restarints from 1-166
> 100.0
> RES 1 166
> END
> second title: weaker restraints for 181
> 1.0
> RES 181 181
> END
> END
>
> Note that 100.0 is a very strong restraint: consider a value about 10 times
> smaller.
>
> ...good luck....dac
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue Feb 09 2010 - 05:30:02 PST
Custom Search