[AMBER] Add charge on quaternary nitrogen

From: Pol Boudard <boudardp.averell.umh.ac.be>
Date: Fri, 5 Feb 2010 14:40:34 +0100

Hello,

 

I would like to add a charge +1 on a quaternary nitrogen located on a
thiophene derivative but I don't find any information about how to do
this.

I tried to modify my pdb file manually and I tried to impose a charge +1
on the nitrogen atom to create the prmtop and inpcrd files with xleap
too but it doesn't work.

How can restrain a charge on a particularly atom with gaff force field?

 

Thank you,

 

Pol

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Received on Fri Feb 05 2010 - 06:00:07 PST
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