[AMBER] errors in leap

From: Beale, John <John.Beale.stlcop.edu>
Date: Mon, 1 Feb 2010 09:09:06 -0600

I am trying to process in leap a protein that is bonded to a short
single strand of DNA. I am getting FATAL errors that look like this:

 

FATAL: Atom .R<DT 262>, A<OP1 33> does not have a type.

FATAL: Atom .R<DT 262>, A<OP2 34> does not have a type.

FATAL: Atom .R<DT 263>, A<OP1 33> does not have a type.

FATAL: Atom .R<DT 263>, A<OP2 34> does not have a type.

.

.

.

.

.

FATAL: Atom .R<DT 270>, A<OP2 34> does not have a type.

 

I am trying to use as the force field ff03. Can someone give me some
guidance on how to get around these errors?

 

Thanks!

 

John

 

 

 

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Received on Mon Feb 01 2010 - 07:30:03 PST
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