[AMBER] atom type

From: shamoon siddiqui <shamoonsiddiqui.gmail.com>
Date: Wed, 23 Dec 2009 05:31:42 +0000

Dear All

We have a pdb file where the O6-guanine of DNA is connected to a
methyl group. What will be the atom type for the methyl group
connected to O atom? Should we determine atom type for all atoms of
O6-methylguanine by using antechamber or we have to specify only atom
type for the additional methyl group?

With best regards
Dr. Shamoon Ahmad Siddiqui
DBT Postdoctoral Fellow
Molecular Biophysics Unit
Indian Institute of Science
Bangalore-560012, India
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Received on Tue Dec 22 2009 - 22:00:02 PST
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