Hi Bill,
do you mean
{
trajin cdsDNAc.mdcrd
rms first mass out cdsDNAcimage.mdcrd
go
}
I tried as many imaging commands as i could , the closest i got to do
what i want is
{
trajin cdsDNAch1.mdcrd
trajin cdsDNAch2.mdcrd
trajin cdsDNAceq.mdcrd
trajin cdsDNAcMD1.mdcrd
trajin cdsDNAcMD2.mdcrd
trajin cdsDNAcMD3.mdcrd
trajin cdsDNAcMD4.mdcrd
trajin cdsDNAcMD5.mdcrd
trajout cdsDNAcc.mdcrd
reference cdsDNAcmn2.rst
strip :WAT*
center :1-38 origin
image origin center familiar
rms reference mass out DNA.dat ':1-38' time 10
rms reference out Naion.dat ':39-74' time 10
go
}
using
center :1-19 origin
image origin center familiar
center :1-38 origin
image origin center familiar
did not make much difference in my case.
Thank you,
Taufik
>> the orientation of the dsDNA between the files changes making the movie
>> unpleasant to watch. any suggestions?
>>
>
> Try an rms fit to 1st frame in the resulting trajectory.
>
> Bill
>
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Received on Tue Dec 08 2009 - 16:00:02 PST
