Hi Amber users,
I am using ptraj to get the correlation matrix of a trajectory and then use "analyze matrix" to diagonalize it. It works fine.
However, I am now trying to analyze several trajectories and I get the average matrix of them by external software(Matlab). Then I do not know how to apply this matrix as the input of "analyze matrix" instruction. As far as I know, that instruction can only accept correlation matrix that is calculated for a certain trajectory, not matrix from outside. How can I use the matrix I made as the input of "analyze matrix"? Or any other suggestions?
Thank you very much!!
Best,
cyk5056
2009-11-18
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue Nov 17 2009 - 21:00:03 PST
