check the strip command- plenty of info in the archives and manual. it
will do what you want.
On 11/15/09, shamoon siddiqui <shamoonsiddiqui.gmail.com> wrote:
> Dear All,
> I am trying to do hydrogen bond analysis for my protein dna complex, but the
> problem is that my system is very big and my simulation is also of 20 ns.
> That is why ptraj is giving segmentation error, i think because my mdcrd
> file is too much heavy and when i did H-bond analysis with small mdcrd file,
> then suceed. So could anyone please tell me how to split mdcrd file into
> several small mdcrd files, i think it is possible with ptraj, but i don't
> know how to do. So please let me know in detail
>
> --
> With best regards
>
> Dr. Shamoon Ahmad Siddiqui
> DBT Postdoctoral Fellow
> Molecular Biophysics Unit
> Indian Institute of Science
> Bangalore-560012, India
> _______________________________________________
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> http://lists.ambermd.org/mailman/listinfo/amber
>
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Stony Brook University E-mail: carlos.simmerling.gmail.com
Stony Brook, NY 11794-5115 Web: http://www.simmerlinglab.org
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Received on Sun Nov 15 2009 - 09:30:03 PST
