[AMBER] solvent

From: Jio M <jiomm.yahoo.com>
Date: Sun, 8 Nov 2009 06:12:34 -0800 (PST)

Dear AMBER users;





I want to solvate my system with solvent, which is not in solvents library.


I read in archive that we can solvate with single molecule also,
instead of using box... but care should be taken for equilibration...





So please suggest what should I do i.e. use single molecule to solvate
or create solvent box?how to decide this and how it can effect final
result?





thanks;


Jiomm







      
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Received on Sun Nov 08 2009 - 06:30:06 PST
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