Dear Amber users,
GB parameters used in the software were calibrated according to the water solvents. They may not be suitable for the simulation of membrane environment .
Any suggestions on changing the parameters are greatly appreciated.
And only part of the protein was solvated in membrane. Is there a way to solvate the protein into two different implicit solvents (for example water and membrane) ?
Many thanks for your help in advance.
Best Regards,
Chicago Ji
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Received on Mon Nov 02 2009 - 13:00:03 PST
