You can do a quick benchmarking for your system by running few ps
simulations. The simulation time is proportional to the length of the
simulation.
On Mon, Nov 2, 2009 at 1:08 AM, nicholus bhattacharjee <
nicholusbhattacharjee.gmail.com> wrote:
> Dear community,
> I am running a protein simulation in my IBM 3400
> server (specification
> http://www-07.ibm.com/systems/in/x/hardware/tower/x3400/specs.html) with
> AMBER 9. My protein is 50 amino acid long. I am doing an explicit solvent
> simulation. Can anybody suggest what is the maximum time needed for this
> simulation.
>
> --
> Nicholus Bhattacharjee
> PhD Scholar
> Department of Chemistry
> University of Delhi
> Delhi-110007 (INDIA)
> Phone: 9873098743(M)
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>
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Received on Mon Nov 02 2009 - 00:00:02 PST
