Re: [AMBER] Lennard Jones Potential A and B coefficients in Topology file

From: Tom Joseph <ttjoseph.gmail.com>
Date: Sat, 31 Oct 2009 10:59:14 -0400

2009/10/31 Tom Joseph <ttjoseph.gmail.com>:
> According to the documentation it's not NTYPES x NTYPES, it is
> NTYPES*(NTYPES+1)/2), which you can verify by looking at a valid
> prmtop file.

To be clear, I was referring to the LENNARD_JONES_ACOEF,
LENNARD_JONES_BCOEF, etc blocks. The NONBONDED_PARM_INDEX, which
indexes these arrays, is indeed NTYPES x NTYPES in length.

--Tom

_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Sat Oct 31 2009 - 08:30:03 PDT
Custom Search