Hei,
I went with my carbon nanotubes for Gromacs where bonds across
periodic box boundaries are implemented.
http://www.gromacs.org/Documentation/How-tos/Carbon_Nanotube
(ubuntu package Gromacs)
It was not very user friendly for this problem but doable.
Terveisin, Markus
2009/10/16 case <case.biomaps.rutgers.edu>:
> On Fri, Oct 16, 2009, Markus Kaukonen wrote:
>>
>> Is a covalent bond across a periodic boundary still impossible with Amber?
>
> Yes (i.e. still not supported).
>
> ...dac
>
>
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> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Mon Oct 26 2009 - 01:30:02 PDT
