Re: [AMBER] the criterion of equilibrium

From: Bill Ross <ross.cgl.ucsf.edu>
Date: Sat, 24 Oct 2009 10:19:09 -0700 (PDT)

> I want to know the criterion of equilibrium of molecular dynamics, when
> analysize the summary.ETOT, what can be called the system has equilibrated,
> in other words, how much the energy can diviate from the average?

I think the thing to watch is not so much the short-term fluctuations,
but rather the long-term trends of various quantities, to see if they
have leveled off.

Bill

_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Sat Oct 24 2009 - 10:30:02 PDT
Custom Search