Re: [AMBER] Re: Fw: Help required in Amber10 Installation

From: Sudeep Narayan Banerjee <sudeep.bose.res.in>
Date: Thu, 15 Oct 2009 18:41:01 +0630

Dear All,

    I tried to define the environment variables in .bashrc file, opened a new
shell & typed in echo $AMBERHOME...it gave me nothing. I even tried with
.bash_profile file but still same output, that's nothing, null. In the
Amber10.pdf file its written that "You should then add $AMBERHOME/exe to your
PATH." I am defining the line in the same file .bashrc and once again i tried
with .bash_profile like

set AMBERHOME=/root/amber10
PATH=$PATH:$AMBERHOME/exe
export AMBERHOME=/root/amber10/

After that whenever I am doing cd $AMBERHOME/src it says "bash: cd: /src: No
such file or directory". What to do in this case? I am doing from root.
Kindly help!

Can I install it in CentOS?




Best Regards,
Sudeep Narayan Banerjee
Junior Computer Engineer
Email: sudeep.bose.res.in
S N Bose National Centre For Basic Sciences
Block JD, Sector III
Saltlake, Kolkata 700098


---------- Original Message -----------
From: Chris Whittleston <csw34.cam.ac.uk>
To: AMBER Mailing List <amber.ambermd.org>
Sent: Wed, 7 Oct 2009 18:48:18 +0100
Subject: Re: [AMBER] Re: Fw: Help required in Amber10 Installation

> David is right - you need to use a new shell because .bashrc is only
> read in
> (and the variables set) when you start a shell. If you want to re-
> read .bashrc manually, you can by typing:
>
> source .bashrc
>
> then try:
>
> echo $AMBERHOME
>
> Chris
>
> 2009/10/7 Bill Ross <ross.cgl.ucsf.edu>
>
> > In bash, if .bashrc doesn't work, you can try .profile
> >
> > export AMBERHOME=/some/dir/path
> >
> > Bill
> >
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
>
> --
> Chris Whittleston
> Department of Chemistry
> University of Cambridge
> Lensfield Road, Cambridge, CB2 1EW
> Email: csw34.cam.ac.uk
> Tel: +44 (0)1223 336423
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
------- End of Original Message -------


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Received on Thu Oct 15 2009 - 05:30:02 PDT
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