Dear all,
The molecule I am interested is a dye labeled short peptide, when
I try to start the MD simulation on my molecule following the
antechamber tutorial HIV-1 RT /EFZ
http://ambermd.org/antechamber/efz.html, at the step 4b, it came
up a error: "Cannot open file ATOMTYPE.INF, exit". I don't know
what could be the problem. What else I am wondering is, for my
dye+peptide molecule (around 250 atoms including H atoms), is
there some common procedure I could follow?
Thank you in advance.
Cheers,
--
Haifeng YUAN
PhD student
MoNOS, Huygens Laboratorium
Universiteit Leiden
Postbus 9504
2300 RA Leiden (The Netherlands)
Tel.: (31) (0)71 527 5912
Fax: (31) (0)71 527 5819
yuan.molphys.leidenuniv.nl
www.monos.leidenuniv.nl
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Received on Tue Oct 13 2009 - 01:00:04 PDT
