Dear Sir/Madam,
Should I do neutralize the charges in DNA-protein complex with Na+ or Mg2+ (before adding solvent) when we generate the prmtop or inpcrd files? I found Na+ was used in the tutorial, but some paper used Mg2+, why?
Best regards,
Cat
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Received on Wed Aug 19 2009 - 22:42:35 PDT
