Hi Manish,
Use the free software "Discovery Studio Visualizer" (from Accelrys
software Inc.).
Load you PDB and then: Sequence > superimpose > Apply Transformation
matrix (check "create copy" and here you can select BIOMT_1..n ), seve
your proyect and that all.
Regards.
> On Wed, Aug 12, 2009, Manish Kumar wrote:
>>
>> How can I generate complete molecule by reading symmetry transformation
>> and
>> monomeric unit.
>
> Amber doesn't do such calculations itself. If you are getting structural
> information from the PDB, then those files have information about getting
> the
> "biological unit".
>
> ...good luck...dac
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
---------------------------------
Dr. Hector A. Baldoni
Departamento de Quimica
UNSL - IMASL (CONICET)
Chacabuco 917 (D5700BWS)
San Luis - Argentina
hbaldoni at unsl.edu.ar
Tel.:+54-(0)2652-423789 ext. 157
----------------------------------
TO ERR IS HUMAN - AND TO BLAME IT ON A COMPUTER IS EVEN MORE SO.
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Wed Aug 19 2009 - 22:17:21 PDT
