[AMBER] Measuring volume of the binding pocket

From: Mannan <malie_03.yahoo.co.in>
Date: Wed, 12 Aug 2009 03:31:18 +0100

Hi AMBER pals,
Apology for repeated posting.

I would like to calculate the change in the volume of a binding pocket over a trajectory.
I would like to plot quantitatively and see how it varies over the time.
I could visually see that, but some quantitative measurement is missing. I have also plotted SASA as well.

How can I do it in AMBER or anyother related stuff
 
Any help is appreciated.
 
Mannan.



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Received on Wed Aug 19 2009 - 21:30:15 PDT
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