Amber Archive Jul 2009 by thread
- [AMBER] antechamber R. A. (Wed Jul 01 2009 - 02:17:51 PDT)
- [AMBER] antechamber R. A. (Wed Jul 01 2009 - 02:19:54 PDT)
- [AMBER] The problem of restart file Jeffrey (Wed Jul 01 2009 - 05:15:34 PDT)
- Re: [AMBER] Steps for NMR structure minimization case (Wed Jul 01 2009 - 05:48:13 PDT)
- [AMBER] amber9 in fedora10 Bala subramanian (Wed Jul 01 2009 - 07:09:15 PDT)
- Re: [AMBER] Nonstandard molecules simulated with parm99EP ? Marek Maly (Wed Jul 01 2009 - 08:47:04 PDT)
- [AMBER] pmemd/bintraj and ifort 10.1.0.21 Peter Varnai (Wed Jul 01 2009 - 11:28:30 PDT)
- [AMBER] default integration scheme in 7 vs. 10 Paul Brandt (Wed Jul 01 2009 - 13:48:46 PDT)
- [AMBER] missing Halogen parameters (radii) for PBSA/GBSA calculations - PB Bomb in pb_aaradi(): No radius assigned for atom suhaib sh (Thu Jul 02 2009 - 06:18:05 PDT)
- [AMBER] MM-PBSA problem Giorgos Lamprinidis (Fri Jul 03 2009 - 06:50:36 PDT)
- [AMBER] Re: Error in REDIII FyD (Fri Jul 03 2009 - 07:59:30 PDT)
- [AMBER] H-bond vs. VdW Taufik Al-Sarraj (Fri Jul 03 2009 - 11:48:12 PDT)
- [AMBER] calculation of the solvent accessibility Rilei Yu (Sat Jul 04 2009 - 01:54:23 PDT)
- [AMBER] Boundary Condition Problem Pepe` Falahat (Sat Jul 04 2009 - 05:10:59 PDT)
- [AMBER] Leap Questions... Cihan Aydin (Sat Jul 04 2009 - 18:41:39 PDT)
- [AMBER] RED: Charge derivation of transtion state analogue manoj singh (Sat Jul 04 2009 - 23:10:57 PDT)
- [AMBER] Re: [q4md-fft] Charge calculation or non standard residue FyD (Sun Jul 05 2009 - 01:30:50 PDT)
- [AMBER] RE: question about TUTORIAL A1 Ross Walker (Sun Jul 05 2009 - 19:29:38 PDT)
- [AMBER] RE: ask for help (zn parameters) Ross Walker (Sun Jul 05 2009 - 19:56:50 PDT)
- [AMBER] non standard residue Neha Gandhi (Mon Jul 06 2009 - 01:07:35 PDT)
- [AMBER] Re: non aminoacid Residue Neha Gandhi (Mon Jul 06 2009 - 01:43:56 PDT)
- [AMBER] unable to read MM charges Vishal Maingi (Mon Jul 06 2009 - 02:32:29 PDT)
- [AMBER] need charges of FE-S cluster subarna thakur (Mon Jul 06 2009 - 03:44:05 PDT)
- [AMBER] RE: question about TUTORIAL A1 Ross Walker (Mon Jul 06 2009 - 09:58:47 PDT)
- [AMBER] unsolved verbosity when running minimization albert albert (Mon Jul 06 2009 - 12:09:02 PDT)
- [AMBER] Directory - GAFF Parameter File? Patrick Gedeon (Mon Jul 06 2009 - 16:31:49 PDT)
- [AMBER] RE: suggestions Ross Walker (Mon Jul 06 2009 - 18:01:51 PDT)
- [AMBER] Tleap input error, atom not found in residue template Brothers, Michael Charles (Mon Jul 06 2009 - 18:25:00 PDT)
- [AMBER] unable to read MM charges (no reply yet) Vishal Maingi (Mon Jul 06 2009 - 20:32:07 PDT)
- [AMBER] Principle Questions s_bill36.yahoo.co.uk (Tue Jul 07 2009 - 00:50:53 PDT)
- [AMBER] DCCM Raja Pandian (Tue Jul 07 2009 - 04:05:20 PDT)
- [AMBER] Steered MD---more than one pair of atoms Hlengisizwe Ndlovu (Tue Jul 07 2009 - 06:27:59 PDT)
- [AMBER] Zinc ion, help Mahmoud A. A. Ibrahim (Tue Jul 07 2009 - 07:26:48 PDT)
- [AMBER] rdparm bug? Paul Mortenson (Tue Jul 07 2009 - 09:29:44 PDT)
- [AMBER] QMMM outupts Myeong Lee (Tue Jul 07 2009 - 10:13:27 PDT)
- AW: [AMBER] Steered MD---more than one pair of atoms Aust, Susanne (Tue Jul 07 2009 - 23:47:56 PDT)
- [AMBER] amber10 installation problem Lan JIN (Tue Jul 07 2009 - 23:49:05 PDT)
- [AMBER] Installing of amber10 Rilei Yu (Wed Jul 08 2009 - 01:34:24 PDT)
- [AMBER] installing of amber10 problem Rilei Yu (Wed Jul 08 2009 - 01:47:13 PDT)
- [AMBER] MPI process terminated unexpectedly forrtl: error (69): process interrupted (SIGINT) Andrew Voronkov (Wed Jul 08 2009 - 02:39:03 PDT)
- [AMBER] suitable force field Jio M (Wed Jul 08 2009 - 03:06:35 PDT)
- [AMBER] ouput trajectory of only CA atom Bala subramanian (Wed Jul 08 2009 - 06:24:56 PDT)
- [AMBER] ff parameters oguz gurbulak (Wed Jul 08 2009 - 07:35:40 PDT)
- [AMBER] rmsd_dna balaji nagarajan (Wed Jul 08 2009 - 09:15:02 PDT)
- [AMBER] bug in antechamber David Mobley (Wed Jul 08 2009 - 09:19:12 PDT)
- [AMBER] suitable force field Jio M (Wed Jul 08 2009 - 00:14:12 PDT)
- [AMBER] MM-PBSA delphi.crg and delphi.siz Manish Kumar (Wed Jul 08 2009 - 14:29:40 PDT)
- [AMBER] Acetylate and Amidate Alison Saunders (Wed Jul 08 2009 - 15:19:44 PDT)
- [AMBER] rmsd_ptraj balaji nagarajan (Wed Jul 08 2009 - 21:19:56 PDT)
- [AMBER] charged or not s. Bill (Thu Jul 09 2009 - 05:33:05 PDT)
- [AMBER] Antechamber prep question Andrew Olson (Thu Jul 09 2009 - 07:39:25 PDT)
- [AMBER] Re: pls help and suggest Gustavo Seabra (Thu Jul 09 2009 - 09:14:42 PDT)
- [AMBER] reference re. determining size of timestep Paul Brandt (Thu Jul 09 2009 - 11:07:50 PDT)
- [AMBER] AMBER windows version ? Siddharth Rastogi (Thu Jul 09 2009 - 14:14:05 PDT)
- [AMBER] question of mm_pbsa 廖青华 (Thu Jul 09 2009 - 18:49:40 PDT)
- [AMBER] unexplained blow-up at restart Sally Pias (Fri Jul 10 2009 - 01:02:42 PDT)
- [AMBER] Restrained backbone conformation MD simulation" Prem Prakash Pathak (Fri Jul 10 2009 - 04:27:38 PDT)
- [AMBER] Manganese bondi radii Chunliyan (Fri Jul 10 2009 - 06:39:51 PDT)
- [AMBER] Manganese Chunliyan (Fri Jul 10 2009 - 06:39:51 PDT)
- [AMBER] manganese bondi radii for mm_pbsa calculation Chunliyan (Fri Jul 10 2009 - 06:39:51 PDT)
- [AMBER] radius for Manganese ion Chunliyan (Fri Jul 10 2009 - 06:39:51 PDT)
- [AMBER] Manganese bondi radii for mm/pbsa calculation Chunliyan (Fri Jul 10 2009 - 06:39:51 PDT)
- [AMBER] EPtot for Alpha-L- methyl fucose Sushil Mishra (Fri Jul 10 2009 - 06:47:26 PDT)
- [AMBER] Regarding Running QM/MM NEB with PM3-PDDG using Amber10 Keith Van Nostrand (Fri Jul 10 2009 - 08:27:12 PDT)
- [AMBER] implicit solvent (GB version2) MD simulation workalemahu berhanu (Fri Jul 10 2009 - 08:53:47 PDT)
- [AMBER] Need help for PMEMD 10 installation Jun Dong (Fri Jul 10 2009 - 09:05:49 PDT)
- [AMBER] problem with energy calculations Thomas Lake (Fri Jul 10 2009 - 09:13:55 PDT)
- Re: [AMBER] charges in topology file Jeffrey (Fri Jul 10 2009 - 09:20:01 PDT)
- TMD: was: Re: [AMBER] charges in topology file Carlos Simmerling (Fri Jul 10 2009 - 09:36:30 PDT)
- [AMBER] Peptide bond broken Syed Tarique Moin (Fri Jul 10 2009 - 11:19:02 PDT)
- [AMBER] calculation of binding energy for lectin and fucuse.. Sushil Mishra (Fri Jul 10 2009 - 11:26:20 PDT)
- [AMBER] ligand/protein minimization Andrew Olson (Fri Jul 10 2009 - 14:00:26 PDT)
- [AMBER] R.E.D intra-mcc and reorientation Ganesh Krishnan (Fri Jul 10 2009 - 15:00:35 PDT)
- [AMBER] Syntax Bellymask Brothers, Michael Charles (Fri Jul 10 2009 - 16:59:01 PDT)
- [AMBER] TMD: solvation and equilibration questions Jeffrey (Fri Jul 10 2009 - 18:07:55 PDT)
- [AMBER] How to fix specific atoms? (not residue) Myeong Lee (Sat Jul 11 2009 - 04:46:06 PDT)
- [AMBER] problem with the energetics of the system Mahmoud A. A. Ibrahim (Sat Jul 11 2009 - 16:23:13 PDT)
- [AMBER] amber dihedral format s. Bill (Sun Jul 12 2009 - 07:05:23 PDT)
- [AMBER] help needed for HID s. Bill (Sun Jul 12 2009 - 11:16:08 PDT)
- [AMBER] Amber10, Serial compilation with ifort Aldo Humberto Romero (Sun Jul 12 2009 - 13:57:40 PDT)
- [AMBER] ptraj mask selection Patrick Gedeon (Sun Jul 12 2009 - 20:45:56 PDT)
- [AMBER] Exclamation marks in trajectory Hugh Heldenbrand (Mon Jul 13 2009 - 08:16:26 PDT)
- [AMBER] Re: reference re. size of dt case (Mon Jul 13 2009 - 09:56:46 PDT)
- [AMBER] Trouble saving amberparm files Alison Saunders (Mon Jul 13 2009 - 10:07:28 PDT)
- [AMBER] (no subject) Beale, John (Mon Jul 13 2009 - 10:35:46 PDT)
- [AMBER] GAFF and NME, ACE terminal res Jio M (Mon Jul 13 2009 - 13:51:06 PDT)
- [AMBER] Problem with amber9 installation moitrayee.mbu.iisc.ernet.in (Mon Jul 13 2009 - 13:31:18 PDT)
- [AMBER] Re: Request to mailing list AMBER rejected E.M. (Mon Jul 13 2009 - 20:37:46 PDT)
- [AMBER] mpirun noticed that process rank 1 ... on signal 1 (Hangup). Naser Alijabbari (Tue Jul 14 2009 - 03:41:39 PDT)
- [AMBER] RE: pmemd parallel Ross Walker (Tue Jul 14 2009 - 05:24:06 PDT)
- [AMBER] Could not find bond parameter for O2 - ca Yogesh Aher (Tue Jul 14 2009 - 05:53:35 PDT)
- [AMBER] Molecular Modeling Workshop and Model(l)ing'09 in Erlangen, Germany Harald Lanig (Tue Jul 14 2009 - 07:02:16 PDT)
- [AMBER] Holding ligand rigid for minimization Andrew Olson (Tue Jul 14 2009 - 08:14:38 PDT)
- [AMBER] Holding ligand rigid for minimization Andrew Olson (Tue Jul 14 2009 - 08:23:01 PDT)
- [AMBER] PMEMD in a Cygwin Environment Hopkins, Robert (Tue Jul 14 2009 - 12:48:41 PDT)
- [AMBER] Counterion release and Free energy of binding ? Marek Maly (Tue Jul 14 2009 - 15:27:18 PDT)
- [AMBER] Equilibrium water density Myeong Lee (Wed Jul 15 2009 - 01:58:52 PDT)
- [AMBER] Alpha-L-Methys Fucose structure problem bond 0fA.d.C1 OME.d.O "S" Sushil Mishra (Wed Jul 15 2009 - 03:36:26 PDT)
- [AMBER] Please help me out bharat lakhani (Wed Jul 15 2009 - 03:43:21 PDT)
- [AMBER] R.E.D. help please s. Bill (Wed Jul 15 2009 - 07:11:46 PDT)
- [AMBER] question of ibelly used in pmemd xiaoqin huang (Wed Jul 15 2009 - 10:34:20 PDT)
- [AMBER] position v time graph Shozeb Haider (Wed Jul 15 2009 - 11:21:35 PDT)
- [AMBER] Can I get the torsion angle between base-pairs using ptraj ? Myeong Lee (Wed Jul 15 2009 - 14:51:02 PDT)
- [AMBER] different results for antechamber/mopac for the same input Alan (Wed Jul 15 2009 - 15:05:07 PDT)
- [AMBER] ptraj - cluster Cihan Aydin (Wed Jul 15 2009 - 22:55:07 PDT)
- [AMBER] ptraj-radial distribution function Nancy (Wed Jul 15 2009 - 23:34:12 PDT)
- [AMBER] questions about RESP Jeffrey (Wed Jul 15 2009 - 23:57:28 PDT)
- [AMBER] carbonic anhydrase (CA) simulation vhakkim boy (Thu Jul 16 2009 - 00:03:23 PDT)
- [AMBER] command for RESP fitting bharat lakhani (Thu Jul 16 2009 - 00:10:33 PDT)
- [AMBER] query regarding FE4S4 subarna thakur (Thu Jul 16 2009 - 00:14:27 PDT)
- [AMBER] Coordinate resetting (SHAKE) cannot be accomplished, Zhongjie Liang (Thu Jul 16 2009 - 01:37:29 PDT)
- [AMBER] IDIVF and PN s. Bill (Thu Jul 16 2009 - 05:11:27 PDT)
- [AMBER] production phase s. Bill (Thu Jul 16 2009 - 05:18:25 PDT)
- [AMBER] vlimit exceeded....nscu_SMD!! Hlengisizwe Ndlovu (Thu Jul 16 2009 - 05:53:50 PDT)
- [AMBER] Disappearing common atoms in Amber 10 with TI Khavrutskii, Ilja (Thu Jul 16 2009 - 06:38:43 PDT)
- [AMBER] ntt=3 and ibelly=1 Kristina Furse (Thu Jul 16 2009 - 09:07:23 PDT)
- [AMBER] amino acids caps for truncated proteins Andrew Voronkov (Thu Jul 16 2009 - 09:31:18 PDT)
- [AMBER] Umbrella Sampling Hemant Kumar (Thu Jul 16 2009 - 11:01:40 PDT)
- [AMBER] amber10 parallel compiling error Nam Kim (Thu Jul 16 2009 - 17:50:57 PDT)
- 回复： [AMBER] amber10 parallel compiling error 廖青华 (Thu Jul 16 2009 - 18:27:05 PDT)
- [AMBER] File conversion for from Amber to Charmm Yogesh Aher (Thu Jul 16 2009 - 23:45:11 PDT)
- [AMBER] diffusion coeficients felix (Fri Jul 17 2009 - 01:15:35 PDT)
- [AMBER] Steered MD.....SHAKE error!! Hlengisizwe Ndlovu (Fri Jul 17 2009 - 01:50:11 PDT)
- [AMBER] vlimit error after heating restart AL Olson (Fri Jul 17 2009 - 07:26:05 PDT)
- [AMBER] The Right Neutralization Procedure and Ionic Strength Calculation ? Marek Maly (Fri Jul 17 2009 - 09:34:44 PDT)
- [AMBER] RESP fit E.M. (Fri Jul 17 2009 - 16:00:08 PDT)
- [AMBER] charge not zero on group: RESP Jio M (Fri Jul 17 2009 - 22:14:58 PDT)
- [AMBER] RE: charge not zero on group:''''.respin1 attached Jio M (Sat Jul 18 2009 - 07:40:18 PDT)
- [AMBER] amber10 parallel compiling error nam kim (Sat Jul 18 2009 - 10:19:39 PDT)
- [AMBER] Box shape change Hemant Kumar (Sat Jul 18 2009 - 12:38:46 PDT)
- [AMBER] Different machines s. Bill (Sun Jul 19 2009 - 02:55:48 PDT)
- [AMBER] -a flag :RESP Jio M (Sun Jul 19 2009 - 03:48:20 PDT)
- [AMBER] which keyword s. Bill (Sun Jul 19 2009 - 05:21:23 PDT)
- [AMBER] (no subject) gunajyoti das (Sun Jul 19 2009 - 08:14:20 PDT)
- [AMBER] (no subject) gunajyoti das (Sun Jul 19 2009 - 08:13:01 PDT)
- [AMBER] Tutorial A3 s. Bill (Sun Jul 19 2009 - 12:33:58 PDT)
- [AMBER] bugfix 10 failing for ambertools1.2 Alan (Mon Jul 20 2009 - 01:14:16 PDT)
- [AMBER] nasty memory bug in calculatePrincipalAxis Hannes Loeffler (Mon Jul 20 2009 - 01:30:38 PDT)
- [AMBER] MM-PBSA tail: equil.out: file truncated during equilibration of salivated complex Sushil Mishra (Mon Jul 20 2009 - 01:32:32 PDT)
- [AMBER] Output file truncated during equilibration of salivated complex in MM-PBSA Sushil Mishra (Mon Jul 20 2009 - 03:40:51 PDT)
- [AMBER] file truncated : Output file truncated during equilibration of salivated complex in MM-PBSA Sushil Mishra (Mon Jul 20 2009 - 05:26:27 PDT)
- [AMBER] RE: DCCM Duggan, Brendan M. (Mon Jul 20 2009 - 07:29:46 PDT)
- [AMBER] nonbon.f question Rizwan Tai (Mon Jul 20 2009 - 12:31:17 PDT)
- [AMBER] RE: the copper paramter Ross Walker (Mon Jul 20 2009 - 14:38:14 PDT)
- [AMBER] equivalent atoms Ye MEI (Mon Jul 20 2009 - 21:56:52 PDT)
- [AMBER] ptraj grid option Youn Kyeung Lee (Tue Jul 21 2009 - 00:15:11 PDT)
- Re: [AMBER] IGB=7 vs IGB=5 Carlos Simmerling (Tue Jul 21 2009 - 06:51:22 PDT)
- [AMBER] Output forces in Sander Frank X. Vázquez (Tue Jul 21 2009 - 14:58:36 PDT)
- [AMBER] Compiling Amber 10 (serial) on Mac OS X 10.5.7 w/ gcc, Intel Fortan 11.0 and MKL 10.0 David Watson (Tue Jul 21 2009 - 14:20:36 PDT)
- [AMBER] RE: Questions about QMMM Ross Walker (Tue Jul 21 2009 - 15:47:49 PDT)
- [AMBER] Patching terminal Manish Kumar (Tue Jul 21 2009 - 16:53:54 PDT)
- [AMBER] ESP charges of Fe4S4 subarna thakur (Tue Jul 21 2009 - 22:19:48 PDT)
- [AMBER] Regarding Hbond interactions aneesh cna (Tue Jul 21 2009 - 23:30:10 PDT)
- [AMBER] Equilibration step Olotu Odunayo (Wed Jul 22 2009 - 02:47:37 PDT)
- [AMBER] errors of PMEMD installation 廖青华 (Wed Jul 22 2009 - 07:28:45 PDT)
- [AMBER] saquinavir parameterization with antechamber Oliver Kuhn (Wed Jul 22 2009 - 08:42:49 PDT)
- [AMBER] [ALERT]: It's the time to come out on streets and stop the complete nation on it's place - Take immediate actions at once with full force. Organization (Wed Jul 22 2009 - 12:13:37 PDT)
- [AMBER] how to launch XLEaP from SSH Secure Shell? Yana Berezovskaya (Wed Jul 22 2009 - 15:44:45 PDT)
- [AMBER] Replacing DNA base with analog amoreno.wesleyan.edu (Thu Jul 23 2009 - 07:20:08 PDT)
- [AMBER] Compiling AMBER 10 (parallel, MPICH2) on Mac OS X Intel w/gcc, ifort, icc David Watson (Thu Jul 23 2009 - 13:03:59 PDT)
- RE: [Subject Filtered] Re: [AMBER] PMEMD in a Cygwin Environment 8% Hopkins, Robert (Thu Jul 23 2009 - 13:37:12 PDT)
- [AMBER] Langevin Dynamics in AMBER10 Biswaranjan Meher (Thu Jul 23 2009 - 14:54:58 PDT)
- [AMBER] mailing list Qinghua Liao (Thu Jul 23 2009 - 18:45:50 PDT)
- [AMBER] cpin error Rukman Hertadi (Fri Jul 24 2009 - 00:18:52 PDT)
- [AMBER] radical simulation Jeffrey (Fri Jul 24 2009 - 00:34:53 PDT)
- [AMBER] xleap facility to insert a residue Sergey Samsonov (Fri Jul 24 2009 - 06:07:27 PDT)
- [AMBER] thymidine monophosphate parametrization Yvonne.Westermaier.unige.ch (Fri Jul 24 2009 - 08:18:18 PDT)
- [AMBER] loading a mol2 file in xleap vallespardojl.chem.leidenuniv.nl (Fri Jul 24 2009 - 10:40:13 PDT)
- [AMBER] DNA + intercalator Rodrigo Galindo (Fri Jul 24 2009 - 15:22:35 PDT)
- Re: [AMBER] DNA + intercalator Bill Ross (Fri Jul 24 2009 - 16:03:06 PDT)
- [AMBER] Simulation with United atom force field in Implicit solvent. Manish Kumar (Sat Jul 25 2009 - 20:55:42 PDT)
- [AMBER] Removed proton in protein (Advanced Tutorials A1 old) albert albert (Sun Jul 26 2009 - 23:57:20 PDT)
- [AMBER] How to read md trajectory for each time slice as an input coordinate Myeong Lee (Mon Jul 27 2009 - 01:16:47 PDT)
- [AMBER] error in antechamber Qinghua Liao (Mon Jul 27 2009 - 04:57:50 PDT)
- [AMBER] Average structure over simulation Olotu Odunayo (Mon Jul 27 2009 - 06:38:59 PDT)
- [AMBER] residues lacking connect0/connect1 Jio M (Mon Jul 27 2009 - 09:10:06 PDT)
- Re: [AMBER] residues lacking connect0/connect1 Bill Ross (Mon Jul 27 2009 - 09:40:31 PDT)
- Re: [AMBER] only ff94 and ff99 for GBSA? Andrew Voronkov (Mon Jul 27 2009 - 09:41:27 PDT)
- [AMBER] nonbon.f question Rizwan Tai (Mon Jul 27 2009 - 12:30:12 PDT)
- [AMBER] Using idecomp=3 with igb=10 (PB) Chris Whittleston (Mon Jul 27 2009 - 13:04:14 PDT)
- [AMBER] QM/MM s. Bill (Mon Jul 27 2009 - 23:44:15 PDT)
- [AMBER] PLUMED release 1.1.0 available Massimiliano Bonomi (Tue Jul 28 2009 - 01:10:39 PDT)
- [AMBER] RE: MM-PBSA test jobs error messages Catein Catherine (Tue Jul 28 2009 - 02:24:31 PDT)
- [AMBER] pulling two atoms in SMD Santosh Mogurampelly (Tue Jul 28 2009 - 05:10:12 PDT)
- [AMBER] Error in Sander Output File Alison Saunders (Tue Jul 28 2009 - 10:00:12 PDT)
- [AMBER] Am I doing the right thing nicholus bhattacharjee (Tue Jul 28 2009 - 10:20:57 PDT)
- [AMBER] Question on REST and VALUE1 keywords hwu.clarku.edu (Tue Jul 28 2009 - 14:06:34 PDT)
- [AMBER] how to choose exclusion policy for GPCR xueqin pang (Tue Jul 28 2009 - 19:12:33 PDT)
- [AMBER] RE: MM-PBSA test jobs error messages (with bugfix.all) Catein Catherine (Tue Jul 28 2009 - 22:50:50 PDT)
- [AMBER] pdb file no bond and charges Jio M (Tue Jul 28 2009 - 23:28:48 PDT)
- [AMBER] RED.III: Invalid Optimization OUTPUT s. Bill (Wed Jul 29 2009 - 01:37:27 PDT)
- [AMBER] Re: MM-PBSA test jobs error messages (Can i fix the problem without recompile the amber?) Catein Catherine (Wed Jul 29 2009 - 02:39:02 PDT)
- [AMBER] MPI error vhakkim boy (Wed Jul 29 2009 - 02:44:35 PDT)
- [AMBER] MM/PBSA, MM/GBSA and NMODE Analysis Matthias Negri (Wed Jul 29 2009 - 03:55:46 PDT)
- [AMBER] Compiling AmberTools 1.2 with intel compilers for Mac Osx in 64 bits Alan (Wed Jul 29 2009 - 09:00:42 PDT)
- [AMBER] Installing Amber10 on Ubuntu David Dubins (Wed Jul 29 2009 - 11:50:12 PDT)
- [AMBER] Re: problem of installation of amber10 Mengjuei Hsieh (Wed Jul 29 2009 - 12:41:52 PDT)
- [AMBER] Normal mode analysis of water bharat lakhani (Thu Jul 30 2009 - 02:27:19 PDT)
- [AMBER] PCA analysis: the first vector is the movement of whole molecule. Catein Catherine (Thu Jul 30 2009 - 03:37:49 PDT)
- [AMBER] ambpdb problem Jio M (Thu Jul 30 2009 - 12:12:10 PDT)
- [AMBER] Non-Standard Amino Acid Residue LEAP ERROR Brothers, Michael Charles (Thu Jul 30 2009 - 15:28:43 PDT)
- [AMBER] What is the meaning of "rms first *" Catein Catherine (Thu Jul 30 2009 - 20:49:17 PDT)
- [AMBER] query bharat lakhani (Fri Jul 31 2009 - 00:42:04 PDT)
- [AMBER] Compilation error with pmemd (amber10) on fedora9 64 bits Nicolas SAPAY (Fri Jul 31 2009 - 02:41:21 PDT)
- [AMBER] vertex atom mismatch Clark, Tiffany D (Fri Jul 31 2009 - 06:14:15 PDT)
- [AMBER] problem from xleap Qinghua Liao (Fri Jul 31 2009 - 07:38:18 PDT)
- [AMBER] Protonated or not s. Bill (Fri Jul 31 2009 - 10:15:32 PDT)
- [AMBER] Metalloproteins - Ligand Protonation s. Bill (Fri Jul 31 2009 - 11:01:42 PDT)
- Last message date: Wed Aug 19 2009 - 19:59:29 PDT
- Archived on: Mon Dec 23 2024 - 05:53:49 PST
