
trajin ../../PROD/HYY_W_prod.mdcrd.bz2    
trajin ../../PROD/HYY_W_prod.mdcrd1.bz2    

center :265 mass origin
image origin center familiar

rms first mass out rms_HYY_W_all time 10.0 :1-265
rms first mass out rms_HYY_W_rec time 10.0 :1-264
rms first mass out rms_HYY_W_bac time 10.0 :1-264@N,CA,C
rms first mass out rms_HYY_W_leg time 10.0 :265

average avg_HYY_W_W_prod_nowrap.pdb :1-265 pdb nowrap

strip :WAT
strip :Na+

trajout Strip_HYY_W_prod.mdcrd

   go
