Re: [AMBER] adding chain id to ptraj pdb output

From: Bala subramanian <bala.biophysics.gmail.com>
Date: Mon, 23 Mar 2009 11:37:43 +0000

Hi,
I am sure if ptraj can do this but this can be done easily with biopython
that has a module to parse pdb files and manipulate text informations.

Bala

On Sun, Mar 22, 2009 at 3:09 AM, Paul Brandt <brandt.j.gene.com> wrote:

> Dear amber users,
>
>
>
> I need to add chain IDs and renumber the pdb file output from ptraj. I
> need
> to do this for hundreds of files. I'm pretty sure the ptraj can't do this,
> but would love to find out that I'm wrong.
>
>
>
> If ptraj can't: Does anyone know of a program can do this for a batch of
> ptraj pdb output files.
>
>
>
> Thanks,
>
>
>
> Paul
>
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Received on Wed Mar 25 2009 - 01:08:00 PDT
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