Re: [AMBER] pmemd compile error....

From: Robert Duke <rduke.email.unc.edu>
Date: Thu, 19 Mar 2009 15:25:04 +0000

Forgot to attach the graphic. Duh. - Bob

----- Original Message -----
From: "Giorgos Lamprinidis" <lamprinidis.pharm.uoa.gr>
To: "AMBER Mailing List" <amber.ambermd.org>
Sent: Thursday, March 19, 2009 11:06 AM
Subject: [AMBER] pmemd compile error....


Duke,



My colleague Giannis Georgiadis re-compiled pmemd with 64bit compiler
because our HP supercomputer has more than 1GB stack limit for 64bit
applications. We shall increase the stack limit for the 32bit version to
400MB (this is the maximum) when he reboot the computer.

The warning messages disappeared but the Terminated Abnormally errors are
still there without any other messages..

...................

STOP PMEMD Terminated Abnormally!

STOP PMEMD Terminated Abnormally!

STOP PMEMD Terminated Abnormally!

STOP PMEMD Terminated Abnormally!

STOP PMEMD Terminated Abnormally!

STOP PMEMD Terminated Abnormally!

STOP PMEMD Terminated Abnormally!

STOP PMEMD Terminated Abnormally!

MPI Application rank 6 exited before MPI_Init() with status 0

Failed sending message: (Unable to connect to socket (Connection refused)).

....................



Any suggestions plz?



Dr George Lamprinidis
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Received on Fri Mar 20 2009 - 01:16:00 PDT
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