[AMBER] Re: join two units in amber9 or amber10

From: Taufik Al-Sarraj <taufik.alsarraj.utoronto.ca>
Date: Mon, 16 Mar 2009 21:11:30 +0000


A while back i asked about creating a bond between two units in xleap.
In the manual there is a combine command that can combine two or more
units into one and then i can use the bond command to create the bond.
my question is how does xleap (AMBER) decide on the orientation when
combining two units?

taufik.alsarraj.utoronto.ca wrote:
> Hello,
> Is it possible to load two molecules (units) in xleap and then create
> a bond between one atom from UNIT 1 and one atom from UNIT 2? how
> would i view both units on one edit screen to see if the bond has been
> created?
> secondly is there a way to make two different units two residues in a
> new unit in AMBER 9 or 10?
> Thank you,
> Taufik

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Received on Wed Mar 18 2009 - 01:11:51 PDT
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