Dear Amber users,
I'm trying to use the 8Mureabox.off in order to
simulate protein-urea interaction.
I can't understand which are the parameters
used for urea molecules from the 8Mureabox.off file.
I was wondering if there's a possibility to extract
from it a sort of prepin file for just one urea molecule,
or if there's somewhere a file with the topology and
parameter for one urea molecule.
Infact I would also need to create a different, in
terms of boxwith, 8Mureabox but I need to create
a file with the Amberparams.
Thank you very much,
Anna
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Received on Wed Mar 11 2009 - 01:08:23 PDT
