[AMBER] angle between ligand ring plane and axis

From: Jia Xu <xujia.ruc.gmail.com>
Date: Wed, 4 Mar 2009 19:00:08 +0800

Dear Amber users,
    I would like to analyze the axial ligand orientation in the trajectory
of a heme protein. For example, I want to get the angle (shown in
attachment) between the residue HIS96 imidazole plane and the NA-Fe-NC axis
from the trajectory of a heme protein (PDB entries 1W92). However, I have
no idea how to manage it. Could anyone help me to solve that problem?

Thanks!

-- 
Jia Xu



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1W92.jpg
(image/jpeg attachment: 1W92.jpg)

Received on Fri Mar 06 2009 - 01:07:59 PST
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