Dear Zgong,
I am copying this message to the amber mailing list which is the best place
for such queries - see
http://ambermd.org for details on how to sign up.
With regards to > process_mdout.perl ../polyAT_vac_md1_12Acut.out
try
perl process_mdout.perl ../polyAT_vac_md1_12Acut.out
if you get
> perl command not found.
Then you will need to install perl on your machine. Try 'yum install perl' -
I think that will work on Ubuntu.
All the best
Ross
From: zgong.hust [mailto:zgong.hust.gmail.com]
Sent: Thursday, November 06, 2008 12:09 AM
To: amber_tutorial_query
Subject: Poly(A)-Poly(T) DNA Tutorial Query
Dear sir:
I have read your amber tutorial for beginners. I have some problems
when I repeat the example.
After I finished the molecular dynamics about the DNA and analyse the energy
I type the command
mkdir polyAT_vac_md1_12Acut
cd polyAT_vac_md1_12Acut
process_mdout.perl ../polyAT_vac_md1_12Acut.out
However, it doesn't work. I have download your perl script, but I don't konw
how to use it. Could you help me about this?
My system is Linux Ubuntu 8.04
My PC hardware is P4 3.0GHZ
Thank you for your help
your sincerely
Zhou Gong
Huazhong University of Science and Technology
China
2008-11-06
_____
zgong.hust
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Received on Fri Dec 05 2008 - 11:00:28 PST
