AMBER: MM-PBSA problem : Missing PBCAV for PB

From: Carra, Claudio (JSC-SK)[USRA] <"Carra,>
Date: Tue, 30 Sep 2008 11:49:26 -0500

Dear All,
I got the following error in the MM-PBSA calculation

[...]
=>> Reading files
    Reading snapshot_com.all.out
    WARNING: Missing PBCAV for PB in 0 -> Taken from -1
    WARNING: Missing PBDIS for PB in 0 -> Taken from -1
    WARNING: Missing SURF for MS in 0 -> Taken from -1
    WARNING: Missing PBCAV for PB in 1 -> Taken from 0
    WARNING: Missing PBDIS for PB in 1 -> Taken from 0
    WARNING: Missing SURF for MS in 1 -> Taken from 0
    WARNING: Missing PBCAV for PB in 2 -> Taken from 1
    WARNING: Missing PBDIS for PB in 2 -> Taken from 1
    WARNING: Missing SURF for MS in 2 -> Taken from 1
    WARNING: Missing PBCAV for PB in 3 -> Taken from 2
    WARNING: Missing PBDIS for PB in 3 -> Taken from 2
    WARNING: Missing SURF for MS in 3 -> Taken from 2
   [...]

and I don't get the final results. The same script works
perfectly for a system of smaller dimension.
do you have any idea on the origin of this and how to fix the problem?
thanks a lot
regards
claudio



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Received on Wed Oct 01 2008 - 05:11:13 PDT
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