AMBER: RMSD restraint in umbrella sampling

From: <nurith.rice.edu>
Date: Thu, 18 Sep 2008 15:36:24 -0500 (CDT)

Hi,

I am trying to run umbrella sampling on a reaction coordinate described as
the RMSD w.r.t. some reference structure. Is there a way to do it in
AMBER, similar to the CONS module in CHARMM?
>From the little documentation there is, I could only find how to make
distance, angle and dihedral restraints. Can I also do RMSD?

Thanks!
N.
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Received on Fri Sep 19 2008 - 03:11:15 PDT
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