Re: AMBER: D2O

From: Carlos Simmerling <carlos.simmerling.gmail.com>
Date: Tue, 9 Sep 2008 14:08:37 -0400

it's important to first clarify to yourself and us what properties of
D2O you are trying to reproduce, as compared to H2O. for example, are
you looking at H/D exchange rates in NMR, or perhaps enzymatic KIE, or
something else? each of these would require a different approach (if
they are even tractable at all)

On Tue, Sep 9, 2008 at 1:00 PM, Chih-Ying Lin <chihying.usc.edu> wrote:
>
>
> Hi
> Does amber support D2O simulation?
> What is the difference between H2O simulation and D2O simulation?
>
> And, how about the force field paramters of D2O?
>
> How to simulate the D2O system instead of H2O?
>
> Thank you
> Lin
> -----------------------------------------------------------------------
> The AMBER Mail Reflector
> To post, send mail to amber.scripps.edu
> To unsubscribe, send "unsubscribe amber" (in the *body* of the email)
> to majordomo.scripps.edu
>
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" (in the *body* of the email)
      to majordomo.scripps.edu
Received on Wed Sep 10 2008 - 06:07:47 PDT
Custom Search