Re: AMBER: nmode units

From: David A. Case <case.biomaps.rutgers.edu>
Date: Thu, 4 Sep 2008 10:58:22 -0400

On Thu, Sep 04, 2008, Arturas Ziemys wrote:
>
> If I run entropy calculations, nmode is invoked through mm_ppbs scripts.
> My statistics output contains no info on vibrations. But it contains
> entropy estimate. So I am wandering what are those units, as output
> contains just values.

Compare the numbers in the nmode output itself to what mm_pbsa collects.
Nmode computes entropies in entropy units (cal/mol-K), and its outputs
are clearly labelled.

....dac

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Received on Sun Sep 07 2008 - 06:07:29 PDT
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