Re: AMBER: B-factor calculation from data with different write frequencies

From: Bill Ross <ross.cgl.ucsf.edu>
Date: Wed, 28 May 2008 11:18:06 -0700 (PDT)

> The value of the B-factor CANNOT depend on your sampling frequency !

On second thought, it seems like it must to some extent, e.g. in the
limit, choosing just beginning and end frames of a long run would miss all
sorts of state. Also, couldn't it bias the result to sample one part of
the state space more than another?

Bill
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Received on Sun Jun 01 2008 - 06:07:16 PDT
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