Hi,
I have run a MD simulation of a protein and the trajectory revealed instabilities in some regions of that protein. So I would like to ran the MD simulation again but using different initial velocities, in order to see if I these instabilities are kept. Does anyone know how to change the initial velocities? Can I use the same top and crd files to initiate the equilibration phase?
Thanks a lot,
Jena
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Received on Wed May 14 2008 - 06:07:44 PDT
