I apologize for the simplicity of this question,
I would like to create a single stranded DNA using nucgen, i used the
following (AMBER 9)
nuc.in
' NUC 1
D
A5 T T T T G T C T G A A A C C C T G T3
END
$ABDNA'
then
nucgen -O -i nuc.in -o nuc.out -d .../nucgen.dat -p nuc.pdb
I get a pdb file with the first 16 residues, even though i have 19. i
also get a double stranded DNA with 8 residues on each side.
should i take away the 1 after NUC? or should i split the residues into
two lines?
Thank you for your help,
Taufik
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Received on Wed May 07 2008 - 06:07:49 PDT
