Hi Sudipta
This is from the log file:
configure:3475: gcc -static -all-static conftest.c >&5
cc1: error: unrecognized command line option "-all-static"
So that is the problem - thus try changing the export LDFLAGS=-all-static to
just -static and try again.
Good luck
Ross
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|\oss Walker
| Assistant Research Professor |
| San Diego Supercomputer Center |
| Tel: +1 858 822 0854 | EMail:- ross.rosswalker.co.uk |
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From: owner-amber.scripps.edu [mailto:owner-amber.scripps.edu] On Behalf Of
sudipta sinha
Sent: Friday, May 02, 2008 11:30 AM
To: amber.scripps.edu
Subject: Re: AMBER: Installation problem of AMBER on cluster
Hi Ross,
Still I am getting some error during compilation of MPICH2. Here
the issue is coming from c compiler. Now I clearly tell you what I have
done.
In .bashrc file we put the commands
export FC=g95
export F90=g95
export LDFLAGS=-all-static
export FFLAGS=-static
export CFLAGS=-static
export CXXFLAGS=-static
export CXXLDFLAGS=-static
and then compiled it by $source .bashrc
Then I untar the file mpich2-1.0.7.tar.gz in /usr/local and also make a
directory mpich2-1.0.7-g95 in /usr/local. Then I have typed the command
$./configure –prefix=/usr/local/mpich2-1.0.7-g95
But it is giving some errors
ERRORS:==================================================
Configuring MPICH2 version 1.0.7 with
'--prefix=/usr/local/mpich2-1.0.7-g95/' 'CFLAGS=-static' 'CXXFLAGS=-static'
'F90=g95' 'FFLAGS=-static' 'LDFLAGS=-all-static'
Running on system: Linux node3 2.6.9-67.ELsmp #1 SMP Wed Nov 7 13:56:44 EST
2007 x86_64 x86_64 x86_64 GNU/Linux
Executing mpich2prereq in /usr/local/mpich2-1.0.7/src/mpid/ch3 with
Executing mpich2prereq in /usr/local/mpich2-1.0.7/src/mpid/ch3/channels/sock
sourcing /usr/local/mpich2-1.0.7/src/pm/mpd/mpich2prereq
sourcing /usr/local/mpich2-1.0.7/src/pm/mpd/setup_pm
checking for gcc... gcc
checking for C compiler default output file name... configure: error: C
compiler cannot create executables
See `config.log' for more details.
============================================================================
=====
I am also attaching the config.log file. Please see and tell me what is my
wrong.
Thanks and regards
sudipta
On Fri, May 2, 2008 at 9:11 PM, Ross Walker <ross.rosswalker.co.uk> wrote:
Hi Sudipta,
You should do the following if I remember correctly (assuming you are using
the BASH shell):
cd /usr/local
tar –xvzf mpich2-1.0.7.tar.gz
cd mpich2-1.0.7
export FC=g95
export F90=g95
export LDFLAGS=-all-static
export FFLAGS=-static
export CFLAGS=-static
export CXXFLAGS=-static
export CXXLDFLAGS=-static
(note: you may not need the last 5 options, or they may not work, but it is
useful to try since if you can build a static version it will help you later
since you will not need to worry about setting all the library paths on each
node etc.)
./configure –prefix=/usr/local/mpich2-1.0.7-g95
make
make install
(Then you can build the parallel version of AMBER – for amber 9)
export MPI_HOME=/usr/local/mpich2-1.0.7-g95/
export PATH=/usr/local/mpich2-1.0.7-g95/bin/
(note: the two commands above should probably be put in the default bashrc
so they get set every time you login.)
cd $AMBERHOME/src/
./configure –static –mpich2 g95
make clean
make parallel
Then you can run the parallel tests etc.
Good luck,
Ross
From: owner-amber.scripps.edu [mailto:owner-amber.scripps.edu] On Behalf Of
sudipta sinha
Sent: Friday, May 02, 2008 12:39 AM
To: amber.scripps.edu
Subject: Re: AMBER: Installation problem of AMBER on cluster
Dear sir,
can you please help me about the compilation procedure of mpich2.
We have installed our mpich2 by the following commands.
cd /usr/local/
tar -zxvf mpich2-1.0.7.tar.gz
cd mpich2-1.0.7
./configure
make
make install
Our operating system is RHEL4 and I think the default c and fortran
compiler in RHEL4 are used during the compilation. Here we didn't set g95
compiler for the compilation of mpich2. So, please guide me how to install
mpich2 with g95 and gcc (default c compiler in RHEL4) compiler.
sudipta
On Fri, May 2, 2008 at 12:25 AM, David A. Case <case.scripps.edu> wrote:
On Thu, May 01, 2008, sudipta sinha wrote:
>
> make clean
>
make: *** [clean] Error 2
So, "make clean" did not work, because there is no config.h file.
>
> ./configure -mpich2 g95
This step creates the config.h file. So, you need to do "make clean" now,
(i.e. after the configure step).
>
> MPI_HOME is set to /usr/local/
This implies that the mpich2 libraries (like libmpichf90.*) are in
/usr/local/lib. Make sure that is the case.
> evb_init.o(.data+0x460): undefined reference to `mpi_conversion_fn_null_'
It seems to have found the libraries. The most common problem here is that
the mpich2 libraries were compiled with a different fortran compiler than
g95.
Is that the case?
...good luck...dac
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Received on Sun May 04 2008 - 06:07:44 PDT
