Hi Juyong,
I don’t think any of the developers had access to an IBM power PC system running SuSe Linux and xlf90 – you may well be the only person trying AMBER on such a system. The issue you are seeing seems to be that the developers of netCDF also did not have access to such a system.
A simple work around would be to add –nobintraj to the configure_amber arguments. This will mean that you can’t use binary trajectory files but this won’t be a show stopper. If you get any further errors please post them.
All the best
Ross
From: owner-amber.scripps.edu [mailto:owner-amber.scripps.edu] On Behalf Of juyong Lee
Sent: Friday, May 02, 2008 9:36 AM
To: amber.scripps.edu
Subject: AMBER: cfortran.h error with xlf90 compiler
Dear, amber developers
I'm trying to compile amber10 in the IBM cluster system.
And I bumped into the following compile time error while compiling fort-attio.c code in netCDF directory
========================================
cfortran.h", line 138.3: 1506-205 (S) #error "cfortran.h: Can't find your environment among:
- MIPS cc and f77 2.0. (e.g. Silicon Graphics, DECstations, ...)
- IBM AIX XL C and FORTRAN Compiler/6000 Version 01.01.0000.0000
- VAX VMS CC 3.1 and FORTRAN 5.4.
- Alpha VMS DEC C 1.3 and DEC FORTRAN 6.0.
- Alpha OSF DEC C and DEC Fortran for OSF/1 AXP Version 1.2
- Apollo DomainOS 10.2 (sys5.3) with f77 10.7 and cc 6.7.
- CRAY
- NEC SX-4 SUPER-UX
- CONVEX
- Sun
- PowerStation Fortran with Visual C++
- HP9000s300/s700/s800 Latest test with: HP-UX A.08.07 A 9000/730
- LynxOS: cc or gcc with f2c.
- VAXUltrix: vcc,cc or gcc with f2c. gcc or cc with f77.
- f77 with vcc works; but missing link magic for f77 I/O.
- NO fort. None of gcc, cc or vcc generate required names.
- f2c : Use #define f2cFortran, or cc -Df2cFortran
- NAG f90: Use #define NAGf90Fortran, or cc -DNAGf90Fortran
- Absoft UNIX F77: Use #define AbsoftUNIXFortran or cc -DAbsoftUNIXFortran
- Absoft Pro Fortran: Use #define AbsoftProFortran - Portland Group Fortran: Use #define pgiFortran
- PathScale Fortran: Use #define PATHSCALE_COMPILER"
==========================================
config_amber.h file was generated with -mpich flag and xlf90_suse option
specification of the system is
OS : Linux node481 2.6.5-7.139-pseries64 #1 SMP Fri Jan 14 15:41:33 UTC 2005 ppc64 ppc64 ppc64 GNU/Linux
fortran compiler : xlf90 ver. 9.1
Please help me~
I downloaded amber10 three days ago. However I have failed for three days......
Thanks in advance
--
Lee, Juyong
Lab of Computational biology
Ph.D. Candidate, Department of chemistry
Seoul National University, Seoul, Korea.
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Sun May 04 2008 - 06:07:42 PDT
