Hi Juyong,
This is the same problem – icc 8.1 is too old to compile boost for gleap L. See if you can download v10 and get that installed and then you should be able to compile amber tools with it.
All the best
Ross
From: owner-amber.scripps.edu [mailto:owner-amber.scripps.edu] On Behalf Of juyong Lee
Sent: Thursday, May 01, 2008 9:52 PM
To: amber.scripps.edu
Subject: Re: AMBER: Amber10 installation error
Dear, Ross
Thanks for you immediate response.
And I'm sorry for my ambiguous question. The first error message occurred when I tried to
complie AmberTools with icc(ver 8.1)
I generated config.h by ./configure_at icc command and It was successful.
However when I tried make -f Makefile_at install , It showed the following error logs.......
====================
../../freelib/boost/format/internals.hpp: In method `void boost::io::detail::stream_format_state<Ch,
Tr>::apply_on (basic_ios<Ch, Tr> &, locale_t *) const [with Ch = char, Tr = string_char_traits<char>]':
../../freelib/boost/format/feed_args.hpp:134: instantiated from `boost::io::detail::put (T, const boost::io::detail::format_item<Ch, Tr, Alloc> &, typename boost::basic_format<Ch, Tr, Alloc>::string_type &, typename boost::basic_format<Ch, Tr, Alloc>::internal_streambuf_t &, locale_t *) [with Ch = char, Tr = string_char_traits<char>, Alloc = __default_alloc_template<true, 0>, T = double &]'
../../freelib/boost/format/internals_fwd.hpp:242: instantiated from `boost::io::detail::distribute (boost::basic_format<Ch, Tr, Alloc> &, T) [with Ch = char, Tr = string_char_traits<char>, Alloc = __default_alloc_template<true, 0>, T = double &]'
../../freelib/boost/format/internals_fwd.hpp:251: instantiated from `boost::io::detail::feed (boost::basic_format<Ch, Tr, Alloc> &, T) [with Ch = char, Tr = string_char_traits<char>, Alloc = __default_alloc_template<true, 0>, T = double &]'
../../freelib/boost/format/format_class.hpp:68: instantiated from `boost::basic_format<Ch, Tr, Alloc>::operator% (T &) [with T = double, Ch = char, Tr = string_char_traits<char>, Alloc = __default_alloc_template<true, 0>]'
/usr/include/g++-3/iostream.h:106: instantiated from here
../../freelib/boost/format/internals.hpp:106: warning: unused parameter `locale_t *loc_default'
make[3]: *** [numvec.o] Error 1
===================================
In addtion, now I'm asking system manager to upgrade gcc to newer version, also.
In summary, I can't compile AmberTools using icc because it make a compile time error.
About gcc, I realized that problem with -m32 option is caused by obsolescent version and I asked administrator to fix it. :)
So, my question is what seems to be the problem of compiling amber10 using icc :) ?
Thanks in advance,
Juyong
2008/5/2 Ross Walker <ross.rosswalker.co.uk>:
Hi Juyong,
Your compilers are very old – especially gcc-2.96. You need to update your compilers. Ideally you want at least gcc-3.4. If it is difficult to get the cluster software upgraded then you could try compiling statically on your local machine and then copying thing over – I think this should work, at least for amber tools.
All the best
Ross
From: owner-amber.scripps.edu [mailto:owner-amber.scripps.edu] On Behalf Of juyong Lee
Sent: Thursday, May 01, 2008 7:28 PM
To: amber.scripps.edu
Subject: AMBER: Amber10 installation error
Dear, amber developers
Hi, I'm trying to install amber10 in the linux cluster.
Though I succeded in installing single CPU version amber10 in my desktop, I encounted following error message while compiling AmberTools in the cluster.
======================================
/usr/include/g++-3/iostream.h:106: instantiated from here
../../freelib/boost/format/internals.hpp:106: warning: unused parameter `locale_t *loc_default'
======================================
Another problem is that ./configure_at -mpi gcc command also occurs the error.
It says that -m32 option is not valid.
Could you give me a hint for these problems?
I couldn't find the thread about this kind of the problems. :)
Specification of the cluster is as following :
OS : Linux lg03 2.4.20-28.7smp #1 SMP Thu Dec 18 11:18:31 EST 2003 i686 unknown
ifort version : Version 8.1
gcc version 2.96
cpu : xeon 2.8GHz
--
Lee, Juyong
Lab of Computational biology
Ph.D. Candidate, Department of chemistry
Seoul National University, Seoul, Korea.
--
Lee, Juyong
Lab of Computational biology
Ph.D. Candidate, Department of chemistry
Seoul National University, Seoul, Korea.
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Received on Sun May 04 2008 - 06:07:40 PDT
