AMBER: Average structure

From: James Thomas <>
Date: Mon, 21 Apr 2008 11:21:26 +0100

Dear Amber Community

I would like to inquire if average structure of MD run, after 10 ns for a
protein of ~100aa is reliable as a starting point for further analysis?
I heard from a post-doc who is experienced in Amber, that average structure
is not reliable for short duration simulation.
I look forward to your comments / advices.

How to remove the overall translational & rotational motion in Amber9

Many thanks.

The AMBER Mail Reflector
To post, send mail to
To unsubscribe, send "unsubscribe amber" to
Received on Wed Apr 23 2008 - 06:07:23 PDT
Custom Search