Re: AMBER: parameters for silicon atom

From: Scott Brozell <>
Date: Mon, 25 Feb 2008 18:24:03 -0800 (PST)


Have there been any developments for silicon parameters ?
The context is docking studies of ligands with silicon as a
cogener of carbon.


On Mon, 20 Nov 2006, Chengwen Chen wrote:

> I am interested in a MD study of small molecules (silicon atom
> contained) bound to DNA duplex, parm99 was used. But there are no parameters
> for silicon atom in pam99 force field. Where can I get those parameters? Or
> any other suggesions?

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Received on Wed Feb 27 2008 - 06:07:30 PST
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