Dear all,
I apologize for my last mail and I'll take it back. Prof. Thomas has
indeed fix the problem. I forgot to delete my last output pdb file
before I append the result to it.
Yi-Ming Cheng
----- Forwarded message from d90223013.ntu.edu.tw -----
Date: Sat, 23 Feb 2008 18:15:29 +0800
From: Yi-Ming Cheng <d90223013.ntu.edu.tw>
Reply-To: Yi-Ming Cheng <d90223013.ntu.edu.tw>
Subject: Re: AMBER: Problem with "trajout pdb"
To: "amber.scripps.edu" <amber.scripps.edu>
Hi, Prof. Thomas:
Sorry to disturb you. I just found that the workaround cannot
perfectly fix the problem in my case. The ENDMDL cards does not appear
at every place where they should be. Again, thanks for your help.
Sincerely,
Yi-Ming Cheng
----- Forwarded message from d90223013.ntu.edu.tw -----
Date: Sat, 23 Feb 2008 17:36:24 +0800
From: Yi-Ming Cheng <d90223013.ntu.edu.tw>
Reply-To: amber.scripps.edu
Subject: Re: AMBER: Problem with "trajout pdb"
To: "amber.scripps.edu" <amber.scripps.edu>
Hi Mr. Thomas:
Thanks a lot for your concerning about my question.
Best Regards,
Yi-Ming Cheng
----- Forwarded message from tec3.utah.edu -----
Date: Fri, 22 Feb 2008 22:06:28 -0700 (Mountain Standard Time)
From: Thomas Cheatham <tec3.utah.edu>
Reply-To: Thomas Cheatham <tec3.utah.edu>
Subject: Re: AMBER: Problem with "trajout pdb"
To: Yi-Ming Cheng <d90223013.ntu.edu.tw>
> My question is that why 'END' cards between each coordinate are not
> automatically added with the PDB output when the 'append' option was chosen?
> The only solution I know so far is through shell script to add them manually.
> Any other suggestions or ideas will be much appreciated.
I fixed this; www.chpc.utah.edu/~cheatham/software.html and it will be in
the amber10 version of ptraj... When I added the "append" I didn't even
think about the MODEL/ENDMDL.
--tom
----- End forwarded message -----
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Received on Sun Feb 24 2008 - 06:07:53 PST
